Publications

Journal publications

1. A.M.L. Liekens, J. De Knijf J, W. Daelemans, B. Goethals, P. De Rijk, J. Del-Favero J, BioGraph: Unsupervised Biomedical Knowledge Discovery via Automated Hypothesis Generation, Genome Biology 12:R57, 2011
2. T. Abeel, S. Van Landeghem, R. Morante, V. Van Asch, Y. Van de Peer, W. Daelemans, and Y. Saeys. Highlights of the BioTM 2010 workshop on advances in bio text mining BMC Bioinformatics 2010, 11(Suppl 5):I1, 2010

Conference contributions

1. J. De Knijf, A.M.L. Liekens, B. Goethals, GaMuSo: Graph based Music recommendation in a Social bookmarking service. Proceedings of The Tenth International Symposium on Intelligent Data Analysis, Porto, Portugal, 2011.
2. R. Morante, V. Van Asch, and W. Daelemans. Extraction of biomedical events. In: E.Westerhout, Th. Markus and P. (Editors) Computational Linguistics in The Netherlands 2010 (CLIN 2010), pages 91-106 Utrecht. Netherlands, 2010.
3. R. Morante, S. Schrauwen and W. Daelemans (2011) Corpus-based approaches to processing the scope of negation cues: an evaluation of the state of the art. Proceedings of the Ninth International Conference on Computational Semantics (IWCS 2011), pages 350-354. Oxford, UK, 2011
4. D. Rebholz-Schuhmann, A. Jimeno, Ch. Li, S. Kafkas, I. Lewin, N. Kang, P. Corbett, D. Milward, E. Buyko, E. Beisswanger, K. Hornbostel, A. Kouznetsov, R. Witte, J. B. Laurila, Ch. JO Baker, Ch. Kuo, S. Clematide, F. Rinaldi, R. Farkas, G. Móra, K. Hara, L. Furlong, M. Rautschka, M. Lara Neves, A. Pascual-Montano, Q. Wei, N. Collier, F. Mahbub Chowdhury, A. Lavelli, R. Berlanga, R. Morante, V. Van Asch, W. Daelemans, J. L. Marina, E. van Mulligen, J. Kors and U. Hahn Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. Proceedings of the 4th Symposium on Semantic Mining in Biomedicine (SMBM), pages 66-74. Hinxton, UK, 2010
5. V. Van Asch, R. Morante, and W. Daelemans Towards improving the precision of a relation extraction system by processing negation and speculation. Proceedings of the 4th Symposium on Semantic Mining in Biomedicine (SMBM), pages 164-165. Hinxton, UK, 2010
6. A. Liekens, J. De Knijf, W. Daelemans W., B. Goethals, P. De Rijk, J. Del-Favero. BioGraph: Discovering biomedical relations by unsupervised hypothesis generation. 9th European Conference on Computational Biology (ECCB10), Ghent, Belgium, 2010
7. S. Ceulemans, K. van der Ven, S. De Zutter, A.-S. Lenaerts, K.-F. Norrback, A. Nordin, P. De Rijk, R. Adolfsson, A. Liekens, J. Del-Favero. Genetic analysis of PRL in an isolated northern Swedish schizophrenia sample. XVIIIth World Congress on Psychiatric Genetics. Athens, Greece, 2010.
8. V. Van Asch, W. Daelemans. Using domain similarity for performance estimation. Proceedings of the ACL 2010 Workshop on Domain Adaptation for Natural Language Processing (DANLP) - CISB 978-1-932432-80-0 - Uppsala, Association for Computational Linguistics, 2010, p. 31-36, 2010.
9. R. Morante. Descriptive analysis of negation cues in biomedical texts. Proceedings of the Seventh International Language Resources and Evaluation (LREC'10), Valletta, Malta, May 2010 - CISB 2-9517408-6-7 - 2010, p. 1429-1436
10. W. Daelemans, V. van Asch, R. Morante. Memory-based biomedical named-entity tagging. Proceedings of the First CALBC Workshop - Cambridgeshire, EBI, 2010, p. 31-32
11. R. Morante, V. van Asch Vincent, W. Daelemans. Memory-based resolution of insentence scopes of hedge cues. Proceedings of the Fourteenth Conference on Computational Natural Language Learning (CoNLL): Shared Task - CISB 978-1-932432-84-8 - Uppsala, Association for Computational Linguistics, 2010, p. 40-47
12. J. Ruppenhofer, C. Sporleder, R. Morante, C. Baker, M. Palmer SemEval-2010 Task 10: Linking events and their participants in discourse. Proceedings of the 5th International Workshop on Semantic Evaluation, ACL 2010, Uppsala, Sweden, July 2010 - CISB 978-1-932432-70-1 - ACL, Stroudsburg, Pa, 2010, p. 45-50
13. R. Morante. Semantic role labeling of gene regulation events: preliminary results. Proceedings of the 2010 Workshop on Biomedical Natural Language processing, ACL 2010, Uppsala, Sweden, July 2010 - CISB 978-1-932432-73-2 - ACL, Stroudsburg, Pa, 2010, p. 126-127
14. R. Morante, V. Van Asch, and A. van den Bosch (2009) Dependency Parsing and Semantic Role Labeling as a Single Task. Proceedings of the 7th International Conference on Recent Advances in Natural Language Processing, pp 275-280. Borovets, Bulgaria.
15. R. Morante, V. Van Asch, and A. van den Bosch (2009) Joint memory-based learning of syntactic and semantic dependencies in multiple languages. Proc. of the CoNLL Shared Task 2009, Boulder, Colorado.
16. R. Morante and W. Daelemans (2009) A metalearning approach to processing the scope of negation. Proc. of CoNLL 2009, Boulder, Colorado.
17. R. Morante and W. Daelemans (2009) Learning the scope of hedge cues in biomedical texts. Proc. of BioNLP 2009, Boulder, Colorado.
18. R. Morante, V. Van Asch, and W. Daelemans (2009) A memory-based learning approach to event extraction in biomedical texts. Proc. of the BioNLP Shared Task 2009, Boulder, Colorado.
19. J. Ruppenhofer, C. Sporleder, R. Morante, C. Baker, and M. Palmer (2009) The SemEval-2010 Task on Linking Events and Their Participants in Discourse. Proc. of SEW 2009, Boulder, Colorado.
20. R. Morante, W. Daelemans, and W. Van Asch (2008) A Combined Memory-Based Semantic Role Labeler of English. Proceedings of the 12th Conference on Computational Natural Language Learning, pp. 208-212.
21. R. Morante, A. Liekens, and W. Daelemans (2008) Learning the Scope of Negation in Biomedical Texts. Proceedings of the 2008 Conference on Empirical Methods in Natural Language Processing, pp. 715-724.

Conference Proceedings

1. R. Morante, C. Sporleder (Eds.) Proceedings of the Workshop on Negation and Speculation in Natural Language Processing, Uppsala, Sweden, July 2010 ISBN 978-90-5728-266-9 - Antwerpen: University of Antwerp, 2010

Patent applications

1. A. Liekens, J. De Knijf, P. De Rijk, W. Daelemans, B. Goethals, J. Del-favero, A method and system for using an information system (provisional working title). USPTO Prov App No. 61360539 filed July, 2010