sequence-specific DNA binding

Function • C1624609

Definition

Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. [GOC:jl]

Synonyms

sequence-specific DNA binding • sequence specific DNA binding

Linked items?Related concepts, ordered by their global importance in the network.

DNA Binding    ESR1 gene    BCL2 gene    ESR2 gene    SMAD3 gene    NR3C1 gene    PPARG gene    SP1 gene    SMAD4 gene    HIF1A gene    HDAC2 gene    STAT1 gene    PGR gene    NR1I2 gene    RARA gene    CREB1 gene    promoter binding    TP63 gene    HDAC4 gene    E2F1 gene   

Related concepts

# Concept name Type Relation Support Score
1 transcription factor activity Function Inferred Explain 0.12889
2 Homeobox Domain Known Explain 0.09716
3 regulation of transcription, DNA-dependent Function Inferred Explain 0.08233
4 Homeodomain-related Domain Inferred Explain 0.07437
5 Homeobox, conserved site Domain Known Explain 0.06856
6 Homeodomain-like Domain Inferred Explain 0.06376
7 transcription regulator activity Function Inferred Explain 0.05494
8 Cell Nucleus Component Inferred Explain 0.04412
9 Translin Domain Known Explain 0.03440
10 Translin, N-terminal Domain Known Explain 0.02484
11 Translin, C-terminal Domain Known Explain 0.02484
12 Ets Domain Known Explain 0.02448
13 TSN gene Gene Known Explain 0.02393
14 transcription, DNA-dependent Function Inferred Explain 0.02181
15 replication fork barrier binding Function Known Explain 0.02126
16 Helix-turn-helix, AraC type, subdomain 2 Domain Known Explain 0.02067
17 Transcription regulator, AsnC-type Domain Known Explain 0.02052
18 Basic-leucine zipper (bZIP) transcription factor Domain Known Explain 0.02038
19 TSNAX gene Gene Known Explain 0.02025
20 rDNA binding Function Known Explain 0.01999
21 multicellular organismal development Function Inferred Explain 0.01872
22 Transcription regulator, AsnC-type, HTH domain, conserved site Domain Known Explain 0.01853
23 Transcription regulator, AsnC-type, HTH domain Domain Known Explain 0.01816
24 Helix-turn-helix motif, lambda-like repressor Domain Inferred Explain 0.01793
25 Helix-turn-helix, AraC domain Domain Known Explain 0.01708
26 Homeobox, region Domain Inferred Explain 0.01620
27 Transcription factor CBF/NF-Y/archaeal histone Domain Known Explain 0.01619
28 Transcription factor, NFYB/HAP3, conserved site Domain Known Explain 0.01583
29 rDNA spacer replication fork barrier binding Function Inferred Explain 0.01560
30 Helix-turn-helix, AraC Domain Known Explain 0.01555
31 Trp repressor/replication initiator Domain Known Explain 0.01435
32 DUX4 gene Gene Known Explain 0.01427
33 bZIP transcription factor, bZIP-1 Domain Known Explain 0.01389
34 Chromosomal replication initiator, DnaA C-terminal Domain Known Explain 0.01386
35 HSF5 gene Gene Known Explain 0.01367
36 MEIS1 gene Gene Known Explain 0.01360
37 DNA-binding WRKY Domain Known Explain 0.01344
38 Heat shock factor (HSF)-type, DNA-binding Domain Known Explain 0.01306
39 TPRX1 gene Gene Known Explain 0.01293
40 Sterile alpha motif/pointed Domain Known Explain 0.01289
41 FOXD4L3 gene Gene Known Explain 0.01288
42 TGIF2LX gene Gene Known Explain 0.01288
43 MEIS3P2 gene Gene Known Explain 0.01288
44 Transcription regulator, AsnC-type, C-terminal Domain Known Explain 0.01286
45 DUX3 gene Gene Known Explain 0.01282
46 DUXA gene Gene Known Explain 0.01282
47 ETV3L gene Gene Known Explain 0.01281
48 DUX2 gene Gene Known Explain 0.01280
49 LBX2 gene Gene Known Explain 0.01280
50 DBX2 gene Gene Known Explain 0.01271
51 DUX5 gene Gene Known Explain 0.01269
52 ARGFX gene Gene Known Explain 0.01263
53 DPRX gene Gene Known Explain 0.01263
54 LEUTX gene Gene Known Explain 0.01263
55 Basic leucine zipper Domain Known Explain 0.01260
56 Transcription activator, mating-type protein ALPHA1 Domain Known Explain 0.01255
57 NANOGP8 gene Gene Known Explain 0.01248
58 NANOGP1 gene Gene Known Explain 0.01248
59 NKX6-3 gene Gene Known Explain 0.01248
60 RHOXF2B gene Gene Known Explain 0.01248
61 IRX6 gene Gene Known Explain 0.01235
62 DBX1 gene Gene Known Explain 0.01231
63 DUX1 gene Gene Known Explain 0.01223
64 TGIF2LY gene Gene Known Explain 0.01217
65 MEIS3P1 gene Gene Known Explain 0.01213
66 HSFY2 gene Gene Known Explain 0.01210
67 HSFX2 gene Gene Known Explain 0.01210
68 POU5F2 gene Gene Known Explain 0.01210
69 POU5F1B gene Gene Known Explain 0.01204
70 DRGX gene Gene Known Explain 0.01199
71 TEF gene Gene Known Explain 0.01194
72 HOXC12 gene Gene Known Explain 0.01191
73 NKX1-2 gene Gene Known Explain 0.01191
74 MEIS3 gene Gene Known Explain 0.01181
75 GBX1 gene Gene Known Explain 0.01172
76 C5orf41 gene Gene Known Explain 0.01171
77 HOMEZ gene Gene Known Explain 0.01155
78 ETV2 gene Gene Known Explain 0.01154
79 DBP gene Gene Known Explain 0.01152
80 ISX gene Gene Known Explain 0.01149
81 ONECUT3 gene Gene Known Explain 0.01145
82 SPIC gene Gene Known Explain 0.01139
83 Transcription factor, MADS-box Domain Known Explain 0.01133
84 unmethylated CpG binding Function Known Explain 0.01125
85 purine-rich negative regulatory element binding Function Known Explain 0.01121
86 satellite DNA binding Function Known Explain 0.01105
87 BATF2 gene Gene Known Explain 0.01097
88 PROP1 gene Gene Known Explain 0.01084
89 AT DNA binding Function Known Explain 0.01081
90 VENTX gene Gene Known Explain 0.01076
91 HOXA6 gene Gene Known Explain 0.01068
92 GATAD1 gene Gene Known Explain 0.01056
93 HLX gene Gene Known Explain 0.01034
94 GSC2 gene Gene Known Explain 0.01032
95 HMBOX1 gene Gene Known Explain 0.01031
96 centromeric DNA binding Function Known Explain 0.01023
97 anterior/posterior pattern formation Function Inferred Explain 0.01021
98 ISL2 gene Gene Known Explain 0.01020
99 Zinc finger, GATA-type Domain Known Explain 0.01019
100 NKX1-1 gene Gene Known Explain 0.01016