Resources

The following table provides statistics about the databases that were integrated to form the current BioGraph knowledge base:

Acronym Database Relation Type # Relations Updated
BioGRID Biological General Repository for Interaction Datasets (BioGRID) Gene - Gene 36,032 10 Mar 2011
CTD-CG The Comparative Toxicogenomics Database - Curated Chemical-Gene Interactions Gene - Compound 82,566 10 Mar 2011
CTD-CD The Comparative Toxicogenomics Database - Curated Chemical-Disease Interactions Disease - Compound 6,376 10 Mar 2011
CTD-GD The Comparative Toxicogenomics Database - Gene-Disease relationships Disease - Gene 8,971 11 Mar 2011
DIP Database of Interacting Proteins Gene - Gene 1,547 11 Mar 2011
UniProt Universal Protein Resource Gene - Domain 28,858 14 Mar 2011
GO Gene Ontology Function - Function 36,365 11 Mar 2011
GOA Gene Ontology Annotation (GOA) Database Gene - Function 179,914 11 Mar 2011
HPRD Human Protein Reference Database Gene - Gene 38,783 11 Mar 2011
IntAct IntAct Gene - Gene 35,653 11 Mar 2011
InterPro InterPro Function - Domain 24,181 11 Mar 2011
InterPro InterPro Domain - Domain 18,255 14 Mar 2011
KEGG Kyoto Encyclopedia of Genes and Genomes Gene - Function 15,782 14 Mar 2011
KEGG Kyoto Encyclopedia of Genes and Genomes Compound - Gene 19,069 14 Mar 2011
MeSH MeSH Hierarchy Relations Other - Other 21,999 24 Feb 2011
MINT Molecular Interactions Database (MINT) Gene - Gene 12,277 14 Mar 2011
m2D miR2Disease Disease - Gene 2,341 14 Mar 2011
m2D miR2Disease Gene - Gene 328 14 Mar 2011
NetworKIN NetworKIN Gene - Gene 2,363 14 Mar 2011
OMIM Online Mendelian Inheritance in Man Disease Subtypes Disease - Disease 6,174 14 Mar 2011
OMIM Online Mendelian Inheritance in Man Morbid Map Disease - Gene 2,450 14 Mar 2011
TarBase TarBase Gene - Gene 818 14 Mar 2011

In total, BioGraph contains 532,889 distinct relations among 71,042 biomedical concepts, supported by 61,570 literature references.